IL_4V9D_420

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_420 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2419

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V9D|1|DA|G|869
4V9D|1|DA|U|870
4V9D|1|DA|U|871
4V9D|1|DA|U|872
*
4V9D|1|DA|A|905
4V9D|1|DA|U|906
4V9D|1|DA|G|907
4V9D|1|DA|C|908

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16