IL_4V9D_427

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CGG

Length

7 nucleotides

Bulged bases

4V9D|1|DA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_427 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3074

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V9D|1|DA|C|1488
4V9D|1|DA|C|1489
4V9D|1|DA|A|1490
4V9D|1|DA|G|1491
*
4V9D|1|DA|C|1499
4V9D|1|DA|G|1500
4V9D|1|DA|G|1501

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2