IL_4V9D_432

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUC*GGC

Length

7 nucleotides

Bulged bases

4V9D|1|DA|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_432 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.329

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9D|1|DA|G|2400
4V9D|1|DA|U|2401
4V9D|1|DA|U|2402
4V9D|1|DA|C|2403
*
4V9D|1|DA|G|2414
4V9D|1|DA|G|2415
4V9D|1|DA|C|2416

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L33

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15