IL_4V9D_445

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_445 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2571

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V9D|1|BA|C|1129
4V9D|1|BA|A|1130
4V9D|1|BA|G|1131
4V9D|1|BA|C|1132
*
4V9D|1|BA|G|1142
4V9D|1|BA|G|1143

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BI

30S ribosomal protein S9

Chain BJ

30S ribosomal protein S10