IL_4V9F_012

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V9F|1|0|C|290
4V9F|1|0|C|291
4V9F|1|0|G|292
4V9F|1|0|A|293
4V9F|1|0|C|294
4V9F|1|0|C|295
4V9F|1|0|G|296
*
4V9F|1|0|C|355
4V9F|1|0|C|356
4V9F|1|0|A|357
4V9F|1|0|G|358
4V9F|1|0|U|359
4V9F|1|0|A|360
4V9F|1|0|C|361
4V9F|1|0|G|362

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains