IL_4V9F_018

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACGAAU*AGACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9F|1|0|A|562
4V9F|1|0|C|563
4V9F|1|0|G|564
4V9F|1|0|A|565
4V9F|1|0|A|566
4V9F|1|0|U|567
*
4V9F|1|0|A|591
4V9F|1|0|G|592
4V9F|1|0|A|593
4V9F|1|0|C|594
4V9F|1|0|U|595

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e