IL_4V9F_019

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9F|1|0|U|567
4V9F|1|0|G|568
4V9F|1|0|A|569
4V9F|1|0|C|570
4V9F|1|0|C|571
4V9F|1|0|G|572
*
4V9F|1|0|C|585
4V9F|1|0|C|586
4V9F|1|0|A|587
4V9F|1|0|G|588
4V9F|1|0|U|589
4V9F|1|0|A|590
4V9F|1|0|A|591

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30P