IL_4V9F_040

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

4V9F|1|0|C|1245, 4V9F|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V9F|1|0|U|1115
4V9F|1|0|U|1116
4V9F|1|0|A|1117
4V9F|1|0|A|1118
4V9F|1|0|G|1119
4V9F|1|0|U|1120
4V9F|1|0|G|1121
*
4V9F|1|0|C|1243
4V9F|1|0|U|1244
4V9F|1|0|C|1245
4V9F|1|0|A|1246
4V9F|1|0|A|1247
4V9F|1|0|A|1248

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein LX

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P