IL_4V9F_042

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCUAGACAG*CCGAG

Length

14 nucleotides

Bulged bases

4V9F|1|0|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

4V9F|1|0|C|1147
4V9F|1|0|C|1148
4V9F|1|0|U|1149
4V9F|1|0|A|1150
4V9F|1|0|G|1151
4V9F|1|0|A|1152
4V9F|1|0|C|1153
4V9F|1|0|A|1154
4V9F|1|0|G|1155
*
4V9F|1|0|C|1212
4V9F|1|0|C|1213
4V9F|1|0|G|1214
4V9F|1|0|A|1215
4V9F|1|0|G|1216

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain G

50S ribosomal protein L10E