IL_4V9F_049

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUAGUAG*UGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V9F|1|0|A|1367
4V9F|1|0|U|1368
4V9F|1|0|A|1369
4V9F|1|0|G|1370
4V9F|1|0|U|1371
4V9F|1|0|A|1372
4V9F|1|0|G|1373
*
4V9F|1|0|U|2052
4V9F|1|0|G|2053
4V9F|1|0|A|2054
4V9F|1|0|A|2055
4V9F|1|0|C|2056
4V9F|1|0|U|2057

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain R

50S ribosomal protein L22P