IL_4V9F_058

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

4V9F|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

4V9F|1|0|U|1587
4V9F|1|0|G|1588
4V9F|1|0|G|1589
4V9F|1|0|A|1590
4V9F|1|0|A|1591
4V9F|1|0|G|1592
*
4V9F|1|0|C|1602
4V9F|1|0|A|1603
4V9F|1|0|G|1604
4V9F|1|0|G|1605
4V9F|1|0|A|1606
4V9F|1|0|A|1607
4V9F|1|0|G|1608

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae