IL_4V9F_065

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

4V9F|1|0|A|1857, 4V9F|1|0|C|1872, 4V9F|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V9F|1|0|C|1854
4V9F|1|0|G|1855
4V9F|1|0|C|1856
4V9F|1|0|A|1857
4V9F|1|0|A|1858
4V9F|1|0|A|1859
4V9F|1|0|U|1860
*
4V9F|1|0|A|1869
4V9F|1|0|C|1870
4V9F|1|0|U|1871
4V9F|1|0|C|1872
4V9F|1|0|G|1873
4V9F|1|0|U|1874
4V9F|1|0|A|1875
4V9F|1|0|C|1876
4V9F|1|0|G|1877

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae