IL_4V9F_071

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

4V9F|1|0|G|1979, 4V9F|1|0|U|1985, 4V9F|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V9F|1|0|C|1975
4V9F|1|0|G|1976
4V9F|1|0|U|1977
4V9F|1|0|A|1978
4V9F|1|0|G|1979
4V9F|1|0|U|1980
4V9F|1|0|A|1981
4V9F|1|0|C|1982
4V9F|1|0|C|1983
4V9F|1|0|U|1984
4V9F|1|0|U|1985
4V9F|1|0|G|1986
*
4V9F|1|0|C|2002
4V9F|1|0|U|2003
4V9F|1|0|U|2004
4V9F|1|0|G|2005

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains