IL_4V9F_092

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V9F|1|0|A|2689
4V9F|1|0|U|2690
4V9F|1|0|A|2691
4V9F|1|0|G|2692
4V9F|1|0|U|2693
4V9F|1|0|A|2694
4V9F|1|0|C|2695
*
4V9F|1|0|G|2700
4V9F|1|0|G|2701
4V9F|1|0|A|2702
4V9F|1|0|A|2703
4V9F|1|0|C|2704
4V9F|1|0|U|2705

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain E

50S ribosomal protein L6P

Chain K

50S ribosomal protein L14P