IL_4V9H_063

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9H_063 not in the Motif Atlas

Geometric match to IL_5TBW_008

Geometric discrepancy: 0.1943

The information below is about IL_5TBW_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9H|1|AV|C|11
4V9H|1|AV|U|12
4V9H|1|AV|C|13
*
4V9H|1|AV|G|22
4V9H|1|AV|A|23
4V9H|1|AV|G|24

Current chains

Chain AV

PE hybrid state tRNA Phe

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA