IL_4V9H_097

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9H_097 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.2764

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9H|1|BA|G|881
4V9H|1|BA|G|882
4V9H|1|BA|G|883
*
4V9H|1|BA|C|893
4V9H|1|BA|C|894
4V9H|1|BA|U|895

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BZ

50S ribosomal protein L25