IL_4V9H_158

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GCC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9H_158 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.1851

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9H|1|BA|G|2141
4V9H|1|BA|C|2142
4V9H|1|BA|C|2143
*
4V9H|1|BA|G|2148
4V9H|1|BA|G|2149
4V9H|1|BA|U|2150

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AK

30S ribosomal protein S11

Chain BC

50S ribosomal protein L1