IL_4V9H_164

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9H_164 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1256

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4V9H|1|BA|U|2457
4V9H|1|BA|G|2458
4V9H|1|BA|A|2459
*
4V9H|1|BA|U|2493
4V9H|1|BA|G|2494

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16