IL_4V9J_188

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CCGC*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_188 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2682

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V9J|1|CA|C|68|||C
4V9J|1|CA|C|68|||D
4V9J|1|CA|G|68|||E
4V9J|1|CA|C|68|||F
*
4V9J|1|CA|G|68|||T
4V9J|1|CA|U|68|||U
4V9J|1|CA|G|68|||V
4V9J|1|CA|G|68|||W

Current chains

Chain CA

16S ribosomal RNA

Nearby chains