IL_4V9J_205
3D structure
- PDB id
- 4V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.86 Å
Loop
- Sequence
- GUGUAG*UGAGGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9J_205 not in the Motif Atlas
- Geometric match to IL_1LNT_002
- Geometric discrepancy: 0.3659
- The information below is about IL_1LNT_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V9J|1|CA|G|579
4V9J|1|CA|U|580
4V9J|1|CA|G|581
4V9J|1|CA|U|582
4V9J|1|CA|A|583
4V9J|1|CA|G|584
*
4V9J|1|CA|U|757
4V9J|1|CA|G|758
4V9J|1|CA|A|759
4V9J|1|CA|G|760
4V9J|1|CA|G|761
4V9J|1|CA|C|762
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CL
- 30S ribosomal protein S12
- Chain CO
- 30S ribosomal protein S15
- Chain CQ
- 30S ribosomal protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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