IL_4V9J_214

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_214 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.225

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V9J|1|CA|G|771
4V9J|1|CA|U|772
4V9J|1|CA|G|773
*
4V9J|1|CA|C|806
4V9J|1|CA|A|807
4V9J|1|CA|C|808

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CO

30S ribosomal protein S15

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DD

50S ribosomal protein L2