IL_4V9J_304

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

AGA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGA,UCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_304 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.2067

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9J|1|DA|A|1276
4V9J|1|DA|G|1277
4V9J|1|DA|A|1278
*
4V9J|1|DA|U|1292
4V9J|1|DA|C|1293
4V9J|1|DA|U|1294

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17