IL_4V9K_033
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4V9K|1|AA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9K_033 not in the Motif Atlas
- Homologous match to IL_6CZR_143
- Geometric discrepancy: 0.1841
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V9K|1|AA|G|683
4V9K|1|AA|A|684
4V9K|1|AA|G|685
4V9K|1|AA|U|686
4V9K|1|AA|A|687
4V9K|1|AA|G|688
*
4V9K|1|AA|C|699
4V9K|1|AA|G|700
4V9K|1|AA|C|701
4V9K|1|AA|A|702
4V9K|1|AA|G|703
4V9K|1|AA|A|704
4V9K|1|AA|U|705
4V9K|1|AA|A|706
4V9K|1|AA|C|707
Current chains
- Chain AA
- ribosomal RNA 16S
Nearby chains
- Chain AK
- 30S ribosomal protein S11
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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