IL_4V9K_041

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_041 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.2368

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9K|1|AA|G|993
4V9K|1|AA|A|994
4V9K|1|AA|C|995
4V9K|1|AA|A|996
4V9K|1|AA|U|997
*
4V9K|1|AA|A|1044
4V9K|1|AA|C|1045

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AN

30S ribosomal protein S14 type Z