IL_4V9K_074

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_074 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1188

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V9K|1|BA|G|188
4V9K|1|BA|G|189
4V9K|1|BA|A|190
4V9K|1|BA|A|191
4V9K|1|BA|C|192
4V9K|1|BA|U|193
4V9K|1|BA|G|194
*
4V9K|1|BA|C|201
4V9K|1|BA|U|202
4V9K|1|BA|C|203
4V9K|1|BA|A|204
4V9K|1|BA|G|205
4V9K|1|BA|U|206
4V9K|1|BA|A|207
4V9K|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain B7

50S ribosomal protein L34

Chain BP

50S ribosomal protein L15