3D structure

PDB id
4V9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
AGAAG*UGGU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9K_128 not in the Motif Atlas
Homologous match to IL_7RQB_060
Geometric discrepancy: 0.226
The information below is about IL_7RQB_060
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_07235.1
Basepair signature
cWW-tSH-L-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4V9K|1|BA|A|1469
4V9K|1|BA|G|1470
4V9K|1|BA|A|1471
4V9K|1|BA|A|1472
4V9K|1|BA|G|1473
*
4V9K|1|BA|U|1520
4V9K|1|BA|G|1521
4V9K|1|BA|G|1522
4V9K|1|BA|U|1523

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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