IL_4V9K_164

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4V9K|1|BA|G|2576, 4V9K|1|BA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_164 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1782

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4V9K|1|BA|C|2510
4V9K|1|BA|U|2511
4V9K|1|BA|C|2512
*
4V9K|1|BA|G|2574
4V9K|1|BA|C|2575
4V9K|1|BA|G|2576
4V9K|1|BA|A|2577
4V9K|1|BA|G|2578

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3