IL_4V9K_183

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAA*UUA

Length

7 nucleotides

Bulged bases

4V9K|1|CA|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_183 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.2092

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9K|1|CA|U|30
4V9K|1|CA|G|31
4V9K|1|CA|A|32
4V9K|1|CA|A|33
*
4V9K|1|CA|U|551
4V9K|1|CA|U|552
4V9K|1|CA|A|553

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CL

30S ribosomal protein S12