IL_4V9K_210

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9K_210 not in the Motif Atlas

Homologous match to IL_6CZR_137

Geometric discrepancy: 0.2088

The information below is about IL_6CZR_137

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

4V9K|1|CA|G|597
4V9K|1|CA|U|598
*
4V9K|1|CA|A|640
4V9K|1|CA|U|641
4V9K|1|CA|A|642
4V9K|1|CA|C|643

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CQ

30S ribosomal protein S17