IL_4V9M_020

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V9M|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9M_020 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.1968

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9M|1|AA|G|409
4V9M|1|AA|G|410
4V9M|1|AA|A|411
4V9M|1|AA|A|412
4V9M|1|AA|G|413
4V9M|1|AA|A|414
4V9M|1|AA|A|415
4V9M|1|AA|G|416
*
4V9M|1|AA|U|427
4V9M|1|AA|G|428
4V9M|1|AA|U|429
4V9M|1|AA|A|430
4V9M|1|AA|A|431
4V9M|1|AA|A|432
4V9M|1|AA|C|433

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4