IL_4V9M_260

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9M_260 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1319

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V9M|1|DA|U|239
4V9M|1|DA|G|240
4V9M|1|DA|A|241
4V9M|1|DA|G|242
4V9M|1|DA|U|243
4V9M|1|DA|A|244
4V9M|1|DA|G|245
*
4V9M|1|DA|C|253
4V9M|1|DA|G|254
4V9M|1|DA|A|255
4V9M|1|DA|A|256
4V9M|1|DA|A|257
4V9M|1|DA|G|258

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DP

50S ribosomal protein L15