IL_4V9M_383

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V9M|1|DA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9M_383 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.4149

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9M|1|DA|G|1526
4V9M|1|DA|G|1527
4V9M|1|DA|A|1528
4V9M|1|DA|A|1529
4V9M|1|DA|G|1530
*
4V9M|1|DA|U|1541
4V9M|1|DA|G|1542
4V9M|1|DA|A|1543
4V9M|1|DA|C|1544
4V9M|1|DA|A|1545
4V9M|1|DA|A|1546
4V9M|1|DA|C|154|||B

Current chains

Chain DA

23S ribosomal RNA

Nearby chains