IL_4V9N_039
3D structure
- PDB id
- 4V9N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9N_039 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.3938
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_82096.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V9N|1|AA|U|952
4V9N|1|AA|G|953
4V9N|1|AA|G|954
*
4V9N|1|AA|C|1226
4V9N|1|AA|A|1227
4V9N|1|AA|C|1228
4V9N|1|AA|A|1229
Current chains
- Chain AA
- 16S rRNA (1504-MER)
Nearby chains
- Chain AM
- 30S ribosomal protein S13
- Chain AS
- 30S ribosomal protein S19
- Chain AW
- Transfer RNA; tRNA
- Chain AY
- Bacterial peptide chain release factor 2 (RF-2)
Coloring options: