IL_4V9N_041

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9N_041 not in the Motif Atlas

Geometric match to IL_4JGN_004

Geometric discrepancy: 0.1916

The information below is about IL_4JGN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4V9N|1|AA|U|999
4V9N|1|AA|A|1000
4V9N|1|AA|G|1001
*
4V9N|1|AA|C|1039
4V9N|1|AA|U|1040
4V9N|1|AA|A|1041

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AY

Bacterial peptide chain release factor 2 (RF-2)