IL_4V9N_345

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V9N|1|DA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9N_345 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0678

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9N|1|DA|G|2737
4V9N|1|DA|A|2738
4V9N|1|DA|U|2739
4V9N|1|DA|A|2740
4V9N|1|DA|A|2741
4V9N|1|DA|C|2742
*
4V9N|1|DA|G|2762
4V9N|1|DA|G|2763
4V9N|1|DA|A|2764
4V9N|1|DA|A|2765
4V9N|1|DA|G|2766
4V9N|1|DA|C|2767

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6

Chain DN

50S ribosomal protein L13