3D structure

PDB id
4V9O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9O_190 not in the Motif Atlas
Homologous match to IL_5J7L_250
Geometric discrepancy: 0.058
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4V9O|1|CA|G|188
4V9O|1|CA|G|189
4V9O|1|CA|A|190
4V9O|1|CA|A|191
4V9O|1|CA|C|192
4V9O|1|CA|U|193
4V9O|1|CA|G|194
*
4V9O|1|CA|C|201
4V9O|1|CA|U|202
4V9O|1|CA|A|203
4V9O|1|CA|A|204
4V9O|1|CA|G|205
4V9O|1|CA|U|206
4V9O|1|CA|A|207
4V9O|1|CA|C|208

Current chains

Chain CA
23S rRNA

Nearby chains

Chain C3
50S ribosomal protein L35
Chain CL
50S ribosomal protein L15
Chain CX
50S ribosomal protein L28

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