IL_4V9O_190

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_190 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.058

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V9O|1|CA|G|188
4V9O|1|CA|G|189
4V9O|1|CA|A|190
4V9O|1|CA|A|191
4V9O|1|CA|C|192
4V9O|1|CA|U|193
4V9O|1|CA|G|194
*
4V9O|1|CA|C|201
4V9O|1|CA|U|202
4V9O|1|CA|A|203
4V9O|1|CA|A|204
4V9O|1|CA|G|205
4V9O|1|CA|U|206
4V9O|1|CA|A|207
4V9O|1|CA|C|208

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15

Chain CX

50S ribosomal protein L28