IL_4V9O_326

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CUGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_326 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3726

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

4V9O|1|DA|G|654
4V9O|1|DA|A|655
4V9O|1|DA|G|656
*
4V9O|1|DA|C|750
4V9O|1|DA|U|751
4V9O|1|DA|G|752
4V9O|1|DA|A|753
4V9O|1|DA|C|754

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DH

30S ribosomal protein S8

Chain DO

30S ribosomal protein S15