IL_4V9O_344

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4V9O|1|DA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_344 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1201

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V9O|1|DA|U|1052
4V9O|1|DA|G|1053
4V9O|1|DA|C|1054
4V9O|1|DA|A|1055
4V9O|1|DA|U|1056
*
4V9O|1|DA|A|1204
4V9O|1|DA|U|1205
4V9O|1|DA|G|1206

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14