IL_4V9O_394

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

4V9O|1|EA|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_394 not in the Motif Atlas

Geometric match to IL_5J7L_271

Geometric discrepancy: 0.0668

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V9O|1|EA|G|862
4V9O|1|EA|A|863
*
4V9O|1|EA|U|913
4V9O|1|EA|G|914
4V9O|1|EA|C|915

Current chains

Chain EA

23S rRNA

Nearby chains

Chain EB

5S ribosomal RNA; 5S rRNA

Chain EM

50S ribosomal protein L16

Chain EW

50S ribosomal protein L27