IL_4V9O_432

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V9O|1|EA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_432 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0726

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V9O|1|EA|C|1686
4V9O|1|EA|G|1687
4V9O|1|EA|U|1688
4V9O|1|EA|A|1689
4V9O|1|EA|A|1690
4V9O|1|EA|C|1691
*
4V9O|1|EA|G|1696
4V9O|1|EA|G|1697
4V9O|1|EA|A|1698
4V9O|1|EA|G|1699
4V9O|1|EA|A|1700
4V9O|1|EA|A|1701
4V9O|1|EA|G|1702

Current chains

Chain EA

23S rRNA

Nearby chains

Chain EC

50S ribosomal protein L2

Chain FA

Small subunit ribosomal RNA; SSU rRNA