IL_4V9O_574

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCA*UGUUA

Length

8 nucleotides

Bulged bases

4V9O|1|GA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_574 not in the Motif Atlas

Geometric match to IL_8C3A_130

Geometric discrepancy: 0.3008

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9O|1|GA|U|847
4V9O|1|GA|C|848
4V9O|1|GA|A|849
*
4V9O|1|GA|U|929
4V9O|1|GA|G|930
4V9O|1|GA|U|931
4V9O|1|GA|U|932
4V9O|1|GA|A|933

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GZ

50S ribosomal protein L30