IL_4V9O_638

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGU*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_638 not in the Motif Atlas

Geometric match to IL_1KFO_003

Geometric discrepancy: 0.2715

The information below is about IL_1KFO_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4V9O|1|GA|G|2289
4V9O|1|GA|G|2290
4V9O|1|GA|U|2291
*
4V9O|1|GA|G|2341
4V9O|1|GA|C|2342
4V9O|1|GA|U|2343

Current chains

Chain GA

23S rRNA

Nearby chains

Chain G1

50S ribosomal protein L33

Chain GO

50S ribosomal protein L18

Chain GW

50S ribosomal protein L27