IL_4V9O_696

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAC,GUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_696 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.1329

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9O|1|HA|C|578
4V9O|1|HA|A|579
4V9O|1|HA|C|580
*
4V9O|1|HA|G|761
4V9O|1|HA|U|762
4V9O|1|HA|G|763

Current chains

Chain HA

16S rRNA

Nearby chains

Chain GA

Large subunit ribosomal RNA; LSU rRNA

Chain HO

30S ribosomal protein S15