IL_4V9O_708

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAGC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_708 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.295

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V9O|1|HA|G|774
4V9O|1|HA|G|775
4V9O|1|HA|G|776
4V9O|1|HA|A|777
4V9O|1|HA|G|778
4V9O|1|HA|C|779
*
4V9O|1|HA|G|803
4V9O|1|HA|U|804
4V9O|1|HA|C|805

Current chains

Chain HA

16S rRNA

Nearby chains

Chain GA

Large subunit ribosomal RNA; LSU rRNA

Chain GC

50S ribosomal protein L2

Chain HK

30S ribosomal protein S11