IL_4V9O_735

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_735 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.1916

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V9O|1|HA|G|1310
4V9O|1|HA|A|1311
4V9O|1|HA|G|1312
*
4V9O|1|HA|C|1325
4V9O|1|HA|U|1326
4V9O|1|HA|C|1327

Current chains

Chain HA

16S rRNA

Nearby chains

Chain GF

50S ribosomal protein L5

Chain HM

30S ribosomal protein S13

Chain HS

30S ribosomal protein S19