IL_4V9O_771

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAG*CUUUGC

Length

11 nucleotides

Bulged bases

4V9O|1|FA|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_771 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3717

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4V9O|1|FA|G|75
4V9O|1|FA|G|76
4V9O|1|FA|A|77
4V9O|1|FA|A|78
4V9O|1|FA|G|79
*
4V9O|1|FA|C|90
4V9O|1|FA|U|91
4V9O|1|FA|U|92
4V9O|1|FA|U|93
4V9O|1|FA|G|94
4V9O|1|FA|C|95

Current chains

Chain FA

16S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA