IL_4V9O_781

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

4V9O|1|GA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_781 not in the Motif Atlas

Geometric match to IL_4V88_508

Geometric discrepancy: 0.3686

The information below is about IL_4V88_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99095.1

Basepair signature

cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V9O|1|GA|C|1043
4V9O|1|GA|C|1044
4V9O|1|GA|C|1045
4V9O|1|GA|A|1046
4V9O|1|GA|G|1047
4V9O|1|GA|A|1048
4V9O|1|GA|C|1049
4V9O|1|GA|A|1050
4V9O|1|GA|G|1051
4V9O|1|GA|C|1052
4V9O|1|GA|C|1053
*
4V9O|1|GA|G|1106
4V9O|1|GA|G|1107
4V9O|1|GA|U|1108
4V9O|1|GA|C|1109
4V9O|1|GA|G|1110
4V9O|1|GA|A|1111
4V9O|1|GA|G|1112

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GG

50S ribosomal protein L6