IL_4V9P_013

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V9P|1|AA|A|504, 4V9P|1|AA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_013 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0935

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V9P|1|AA|G|481
4V9P|1|AA|A|482
4V9P|1|AA|A|483
4V9P|1|AA|C|484
*
4V9P|1|AA|G|496
4V9P|1|AA|A|497
4V9P|1|AA|G|498
4V9P|1|AA|U|499
4V9P|1|AA|G|500
4V9P|1|AA|A|501
4V9P|1|AA|A|502
4V9P|1|AA|A|503
4V9P|1|AA|A|504
4V9P|1|AA|A|505
4V9P|1|AA|G|506
4V9P|1|AA|A|507
4V9P|1|AA|A|508
4V9P|1|AA|C|509

Current chains

Chain AA

23S rRNA

Nearby chains

Chain AS

50S ribosomal protein L22

Chain AU

50S ribosomal protein L24