3D structure

PDB id
4V9P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
4V9P|1|AA|A|1899, 4V9P|1|AA|A|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9P_075 not in the Motif Atlas
Homologous match to IL_5J7L_315
Geometric discrepancy: 0.1139
The information below is about IL_5J7L_315
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

4V9P|1|AA|U|1841
4V9P|1|AA|G|1842
*
4V9P|1|AA|U|1898
4V9P|1|AA|A|1899
4V9P|1|AA|A|1900
4V9P|1|AA|A|1901

Current chains

Chain AA
23S rRNA

Nearby chains

Chain AC
50S ribosomal protein L2

Coloring options:


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