IL_4V9P_081

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGA,UCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_081 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1945

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9P|1|AA|A|2052
4V9P|1|AA|G|2053
4V9P|1|AA|A|2054
*
4V9P|1|AA|U|2615
4V9P|1|AA|C|2616
4V9P|1|AA|U|2617

Current chains

Chain AA

23S rRNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain AD

50S ribosomal protein L3